Garnatxa HPC Cluster @ I2SysBio Logo

Hardware

  • Hardware Specifications
  • I2SysBio Data Center Gallery

Quickstart

  • QuickStart Guide

Storage system

  • Basic concepts about Garnatxa
  • Access to the file system
  • Transfer files to/from Garnatxa
  • Split your files
  • Tape library

Software and libraries

  • Pre-installed software
  • Modules environment
  • Available software
  • Mamba / Anaconda environments
  • Podman/Singularity vs Docker
  • Garnatxa’s Gitlab service

Working in Garnatxa

  • Usage rules
  • Interactive jobs
  • Submitting jobs to Garnatxa
  • System limits
  • Priority policy
  • Jobs in Garnatxa
  • Basic concepts about SLURM
  • Memory and CPU requests
  • Slurm commands
  • Submitting jobs to the cluster: sbatch
  • Pipelines: Nextflow

Annexes

  • Publications & public media
  • Statistics of usage
  • Security guides
  • Git guide
  • IT Support

Contact

  • Support and Contact
  • Terms of Use
Garnatxa HPC Cluster @ I2SysBio
  • I2SysBio Data Center Gallery

I2SysBio Data Center Gallery

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Figure 1. I2SysBio’s Data Center is currently housing 6 racks. The room has capacity to contain a total of 12 racks.

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Figure 2. The Data Center employs a hot aisle/cold aisle arrangement of the IT racks

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Figure 3. Garnatxa HPC cluster and dedicated network devices for high performance computing.

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Figure 4. The UPS provides to the Data Center a pair of redundant energy lines. It is enabled to provide about 125kVA of energy and a set of batteries provides about 2 hours of autonomy with high load.

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